PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.01TNR
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 595aa    MW: 66639 Da    PI: 9.3293
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.01TNRgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.37.2e-08503552147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ + ++     k+Rt  ++k++w ++
      Aradu.01TNR 503 RRPFSVLEVEALVQAVEKLGTGRWRDVKQRAFdhaKHRTYVDLKDKWKTL 552
                      567888999**********************99**************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542364.08E-6309388IPR029071Ubiquitin-related domain
PROSITE profilePS5129414.75498557IPR017930Myb domain
SMARTSM007171.6E-7502555IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-10503553IPR009057Homeodomain-like
SuperFamilySSF466891.11E-15504585IPR009057Homeodomain-like
CDDcd116607.08E-17504554No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MVLQKRLNYS FDGYHVPVIP RASRSVRGRG SIRKKRDSSH IHAFEILASV AGNFLHANES  60
SNPENTSFPK EADIFHGNDV KEKENDETVG LFKGDLFTHG TCSKTTTTCV PSLQGEHDNQ  120
SHLEGQGQNV LEREDGGMKR RNSNEKIIHI KGSYVGVTEP GHRVFKDCTL ENNVEKPLPE  180
CHNHLDPSHG GSTARKLVNT DNDENFARCT QSNLRNKISS SPLDTPKLKD ASPIASDENN  240
SRDNSELENL QRMYPFKKRK FFNQTSSSTS DRGSQCQGVF DFSDSKVNST IHGIEESSSI  300
AGQQLHPGSK GCNVKLSIKS FKVPELFIDI PETATIGSLK RTVMEAVTTI LGDELHVGIL  360
LQGKKIRDDN KTLIQTGICQ DDKRHRLGFM LEPRHTRISS PSYNEDPCYL TSSPQQKLSR  420
QSTSLMFQQG TYNVSQERSL IKIESCAEGD LKLASSVADT SANNNMSKCR ALVAVPAINM  480
QALAVVPLRR KSGNPDFGQR RIRRPFSVLE VEALVQAVEK LGTGRWRDVK QRAFDHAKHR  540
TYVDLKDKWK TLVHTARISP QQRRGEPVPQ ELLDRVLAAH AYWSQQQCKH QLKPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A6e-554875951109Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1250259QRMYPFKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0063626e-92AP006362.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT34B12, TM0147a, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015960714.10.0PREDICTED: telomere repeat-binding protein 5-like
TrEMBLA0A0B2S7Q90.0A0A0B2S7Q9_GLYSO; Telomere repeat-binding protein 5
STRINGGLYMA07G15940.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131882124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.12e-94TRF-like 2